I want to be able to change server configuration files (php.ini, .htaccess ...) from Click&Go console

This is now live. You can find the Server Setting option when clicking Manage Server in your account. We will be adding additional parameters that can be controlled from UI to this section.
Feel free to suggest new parameters you want to be able to set, here in the Suggestions page.
Cloudways Team
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AdminCloudways (Admin, Cloudways) commented
Jeff, we are going to deploy a new feature this week that will allow the modification of stack parameters directly from console. Initially just a few bunch of parameters will be there (max upload size, time-outs ...) but we have built it in a way that will be very easy to expand to any system or app specific configuration value. So please check it out later this week when we release (hopefully Thu) and let us know what else you would like to see added.
As per the specific issue with application path, checking with team.
Pere
Cloudways Team -
Jeff commented
I like the availability of the LAMP stack, but my framework requires the server to point to a specific directory, ie:
public_html/application
public_html/public <- here
public_html/vendor
public_html/...The current directory ownership won't let me upload to the directory below the public_html so I cant do this and simply use the existing structure
/application
/logs
/public_html
/vendor
/...